PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G200600.1
Common NamePHAVU_009G200600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 352aa    MW: 40629.4 Da    PI: 8.3421
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G200600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.72.1e-381102583133
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec.....eaes 77 
                         gk+drhski T++g+RdRR+Rls+++a+ fF Lqd+LGf k+skt+eWL++qak +i  l++            +ss+ sec     + ++
  Phvul.009G200600.1 110 GKRDRHSKINTARGLRDRRMRLSLDVAKSFFGLQDMLGFEKASKTVEWLMNQAKVEINRLAKEkrkqkknvhhsCSSAGSECeegvsSVDE 200
                         89*************************************************************7777666655544444666544432222 PP

                 TCP  78 ssssasnsssg......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                          ++s +    +      +++k ++ + k +++ ++++ lake r++ar+rarertrek r +
  Phvul.009G200600.1 201 VVVSRD----EeqageeREEKVTKRRVKLSRKISAFHPLAKECRERARERARERTREKIRSR 258
                         222222....13344555555555666677777779**********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-41110257IPR005333Transcription factor, TCP
PROSITE profilePS5136930.966111169IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.756237254IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MQSQTSDTFH SHYGNEPISY YDPSFYYTRP FSIDSESNPT SKQENNPDLP PLSFFHFPSP  60
PFEDAQIFLE QHHDFLLHKP LPQDPEPQPV SIALETSAKK SNQIPRKRLG KRDRHSKINT  120
ARGLRDRRMR LSLDVAKSFF GLQDMLGFEK ASKTVEWLMN QAKVEINRLA KEKRKQKKNV  180
HHSCSSAGSE CEEGVSSVDE VVVSRDEEQA GEEREEKVTK RRVKLSRKIS AFHPLAKECR  240
ERARERARER TREKIRSRGL AQESKPCREE TDQHLIQLGS WNPSETGQEF GTKSHIVHPS  300
FNVITEGKQQ SYYPKEHDDD SLVILSKWSP SLIFNEHQFA EFQSLGKPWE A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241253RARERARERTREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138340.10.0hypothetical protein PHAVU_009G200600g
TrEMBLV7AXP00.0V7AXP0_PHAVU; Uncharacterized protein
STRINGGLYMA06G23410.21e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-26TCP family protein